{"id":203,"date":"2014-01-23T11:49:41","date_gmt":"2014-01-23T11:49:41","guid":{"rendered":"http:\/\/pop-gen.eu\/wordpress\/?page_id=203"},"modified":"2024-07-01T20:06:38","modified_gmt":"2024-07-01T20:06:38","slug":"comus-coalescent-of-multiple-species","status":"publish","type":"page","link":"https:\/\/pop-gen.eu\/wordpress\/software\/comus-coalescent-of-multiple-species","title":{"rendered":"CoMuS: Coalescent of Multiple Species and CoMuStats"},"content":{"rendered":"

\"image_t6.jpg\"<\/a>Introduction<\/h2>\n

Here, you can download the source code of CoMuS, CoMuStats, as well as R scripts that can be used for different analyses. The R scripts implement specific examples that have been used in CoMuS’ manuscript or, in general, I consider them interesting. You can download them, modify them according to your needs.<\/p>\n

You can download the most recent version from the github:
\nhttps:\/\/github.com\/idaios\/comus<\/a><\/p>\n

or type in terminal: git clone https:\/\/github.com\/idaios\/comus.git<\/p>\n

Instructions:<\/strong><\/h3>\n
    \n
  1. download the code from the previous link<\/li>\n
  2. tar xvfz comus.tar.gz<\/li>\n
  3. cd comus<\/li>\n
  4. to compile: make -f Makefile.gcc (you may need to remove the *.o files)
    \ni.e. rm *.o and then make -f Makefile.gcc<\/li>\n
  5. now you should have the comus executable<\/li>\n
  6. IMPORTANT: there is a pre-compiled executable in the comus.tar.gz. However, sometimes, depending on the system you will not be able to execute it.Instead, you will see the error message:comus: \/lib64\/libc.so.6: version `GLIBC_2.14′ not found (required by comus). <\/em>Please first clean: make clean -f Makefile.gcc<\/strong>
    \nand then recompile the code: make -f Makefile.gcc\u00a0<\/strong><\/li>\n<\/ol>\n

    Scripts and demonstration<\/h3>\n

    In CoMuS manuscript we have used several scripts, simulations and inference examples to demonstrate CoMuS usage. These scripts are provided here either for demonstration or testing purposes.<\/p>\n