{"id":21,"date":"2012-04-10T22:02:49","date_gmt":"2012-04-10T22:02:49","guid":{"rendered":"http:\/\/pop-gen.eu\/wordpress\/?page_id=21"},"modified":"2024-07-01T20:07:02","modified_gmt":"2024-07-01T20:07:02","slug":"software","status":"publish","type":"page","link":"https:\/\/pop-gen.eu\/wordpress\/software","title":{"rendered":"Software"},"content":{"rendered":"<h2>Software for detecting selective sweeps<\/h2>\n<ul>\n<li><strong>OmegaPlus \/ <a href=\"https:\/\/github.com\/alachins\/omegaplus\">github<\/a><\/strong><a title=\"OmegaPlus\" href=\"http:\/\/pop-gen.eu\/wordpress\/?page_id=23\"><strong><br \/>\n<\/strong><\/a><strong>detects selective sweeps based on the Linkage Disequilibrium signatures.\u00a0<\/strong><\/li>\n<li><strong><strong><a href=\"http:\/\/pop-gen.eu\/wordpress\/software\/sweed\">SweeD<\/a> <a href=\"https:\/\/github.com\/alachins\/sweed\">gihub<\/a><br \/>\ndetects selective sweeps using the Site Frequency Spectrum signature<\/strong><\/strong><\/li>\n<li>RAiSD <a href=\"https:\/\/github.com\/alachins\/raisd\">github<\/a><br \/>\nIt combines all 3 known signatures of selective sweeps using the notion of SNP vectors.<\/li>\n<\/ul>\n<h2>Software for simulations<\/h2>\n<ul>\n<li><strong><a href=\"http:\/\/pop-gen.eu\/wordpress\/software\/comus-coalescent-of-multiple-species\">CoMuS<\/a> \/ <a href=\"https:\/\/github.com\/idaios\/comus\">github link<\/a><br \/>\nIt simulates polymorphic data in a multi-species coalescent framework. <\/strong><\/li>\n<li><a href=\"http:\/\/pop-gen.eu\/wordpress\/?p=429\">trajdemog<\/a><br \/>\nPart of the code was made available from RR Hudson. In fact, I just added some code for simulating data in various demographic models.<\/li>\n<li>SPS \/<a href=\"https:\/\/github.com\/aggelosk\/Sps\"> github link<\/a><br \/>\nA forward-backward simulator for simulating genetic data in a spatial framework<\/li>\n<li>FEG \/ <a href=\"https:\/\/github.com\/aggelosk\/game\">github link<\/a><br \/>\nAn evolutionary game simulator for genetic data. Behavior is under selection pressure. There are &#8220;competitors&#8221;, &#8220;synergists&#8221; and individuals who just ignore other members.<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Software for detecting selective sweeps OmegaPlus \/ github detects selective sweeps based on the Linkage Disequilibrium signatures.\u00a0 SweeD gihub detects selective sweeps using the Site Frequency Spectrum signature RAiSD github It combines all 3 known signatures of selective sweeps using the notion of SNP vectors. Software for simulations CoMuS \/ github link It simulates polymorphic &hellip; <\/p>\n<p class=\"link-more\"><a href=\"https:\/\/pop-gen.eu\/wordpress\/software\" class=\"more-link\">Continue reading<span class=\"screen-reader-text\"> &#8220;Software&#8221;<\/span><\/a><\/p>\n","protected":false},"author":4,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-21","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/pop-gen.eu\/wordpress\/wp-json\/wp\/v2\/pages\/21","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pop-gen.eu\/wordpress\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/pop-gen.eu\/wordpress\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/pop-gen.eu\/wordpress\/wp-json\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/pop-gen.eu\/wordpress\/wp-json\/wp\/v2\/comments?post=21"}],"version-history":[{"count":14,"href":"https:\/\/pop-gen.eu\/wordpress\/wp-json\/wp\/v2\/pages\/21\/revisions"}],"predecessor-version":[{"id":829,"href":"https:\/\/pop-gen.eu\/wordpress\/wp-json\/wp\/v2\/pages\/21\/revisions\/829"}],"wp:attachment":[{"href":"https:\/\/pop-gen.eu\/wordpress\/wp-json\/wp\/v2\/media?parent=21"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}